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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032258 through 18771 annotations produced 1 hits



(CG7456):

Annotation Number : CG7456
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032258
Gbrowse : chr2L:10485534-10488623 (-) // 100.0 //
Probeset : 1623203_at
Accessions : protein= NP_609413;, nucleotide= NM_135569;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
FlyMine data for FBgn0032258.
BDGP gene expression has embryonic in situ data for CG7456: 13 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0032258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 ± 14 of 4 1.10Up
Head137 ± 14 of 4 0.90Down
Eye168 ± 124 of 4 1.09None
Thoracicoabdominal ganglion199 ± 34 of 4 1.30Up
Salivary gland746 ± 94 of 4 4.82Up
Crop161 ± 54 of 4 1.00None
Midgut131 ± 24 of 4 0.80Down
Tubule257 ± 74 of 4 1.70Up
Hindgut144 ± 34 of 4 0.90None
Heart122 ± 24 of 4 0.79Down
Fat body91 ± 134 of 4 0.59Down
Ovary234 ± 04 of 4 1.50Up
Testis73 ± 54 of 4 0.50Down
Male accessory glands1034 ± 494 of 4 6.70Up
Virgin spermatheca199 ± 124 of 4 1.29Up
Mated spermatheca242 ± 184 of 4 1.57Up
Adult carcass83 ± 84 of 4 0.50Down
Larval CNS168 ± 94 of 4 1.09None
Larval Salivary gland956 ± 474 of 4 6.18Up
Larval midgut116 ± 34 of 4 0.75Down
Larval tubule231 ± 34 of 4 1.50Up
Larval hindgut212 ± 54 of 4 1.38Up
Larval fat body137 ± 104 of 4 0.90None
Larval trachea252 ± 364 of 4 1.63Up
Larval carcass155 ± 74 of 4 1.01None
S2 cells (growing)321 ± 84 of 4 2.08Up
Whole fly154 ± 44 of 4

Looking for FBgn0032258. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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