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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032260 through 18771 annotations produced 1 hits



(CG13144):

Annotation Number : CG13144
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032260
Gbrowse : chr2L:10490488-10491364 (-) // 100.0 //
Probeset : 1630979_at
Accessions : protein= NP_609415;, nucleotide= NM_135571;
Pathway : 0019028 // viral capsid // inferred from electronic annotation
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0032260.
BioGrid reports that CG13144 interacts with CG32473 CG9206 .
VDRC has 1 RNAi stocks for FBgn0032260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.30Down
Head7 ± 20 of 4 0.30Down
Eye5 ± 20 of 4 0.24Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.24Down
Crop10 ± 30 of 4 0.40Down
Midgut12 ± 20 of 4 0.50Down
Tubule6 ± 10 of 4 0.30Down
Hindgut9 ± 20 of 4 0.40Down
Heart41 ± 24 of 4 1.77Up
Fat body3 ± 10 of 4 0.15Down
Ovary6 ± 00 of 4 0.30Down
Testis7 ± 11 of 4 0.30Down
Male accessory glands13 ± 20 of 4 0.60Down
Virgin spermatheca4 ± 20 of 4 0.18Down
Mated spermatheca3 ± 10 of 4 0.16Down
Adult carcass58 ± 14 of 4 2.50Up
Larval CNS3 ± 20 of 4 0.15Down
Larval Salivary gland6 ± 10 of 4 0.28Down
Larval midgut14 ± 32 of 4 0.62None
Larval tubule9 ± 20 of 4 0.40Down
Larval hindgut9 ± 10 of 4 0.39Down
Larval fat body8 ± 20 of 4 0.30Down
Larval trachea1 ± 10 of 4 0.07Down
Larval carcass10 ± 21 of 4 0.46Down
S2 cells (growing)4 ± 10 of 4 0.18Down
Whole fly23 ± 33 of 4

Looking for FBgn0032260. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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