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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032261 through 18771 annotations produced 1 hits



(CG6094):

Annotation Number : CG6094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032261
Gbrowse : chr2L:10507116-10507918 (+) // 100.0 //
Probeset : 1639954_at
Accessions : protein= NP_609416;, nucleotide= NM_135572;
Interpro : 0003747 // translation release factor activity // inferred from electronic annotation /// 0005515 // protein binding //
FlyMine data for FBgn0032261.
BDGP gene expression has embryonic in situ data for CG6094: 10 pix of staining in 3 body parts.
VDRC has 4 RNAi stocks for FBgn0032261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain113 ± 34 of 4 1.00None
Head79 ± 44 of 4 0.70Down
Eye65 ± 24 of 4 0.56Down
Thoracicoabdominal ganglion121 ± 44 of 4 1.00None
Salivary gland129 ± 134 of 4 1.12None
Crop90 ± 74 of 4 0.80Down
Midgut107 ± 34 of 4 0.90None
Tubule64 ± 14 of 4 0.60Down
Hindgut110 ± 44 of 4 1.00None
Heart90 ± 94 of 4 0.78None
Fat body84 ± 144 of 4 0.73Down
Ovary165 ± 44 of 4 1.40Up
Testis190 ± 64 of 4 1.60Up
Male accessory glands68 ± 44 of 4 0.60Down
Virgin spermatheca53 ± 64 of 4 0.46Down
Mated spermatheca47 ± 44 of 4 0.40Down
Adult carcass87 ± 64 of 4 0.80Down
Larval CNS136 ± 114 of 4 1.17None
Larval Salivary gland68 ± 44 of 4 0.59Down
Larval midgut65 ± 74 of 4 0.56Down
Larval tubule66 ± 24 of 4 0.60Down
Larval hindgut101 ± 84 of 4 0.88None
Larval fat body72 ± 64 of 4 0.60Down
Larval trachea59 ± 64 of 4 0.51Down
Larval carcass60 ± 114 of 4 0.52Down
S2 cells (growing)111 ± 74 of 4 0.96None
Whole fly116 ± 64 of 4

Looking for FBgn0032261. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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