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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032276 through 18771 annotations produced 1 hits


(CG17098):

Annotation Number : CG17098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032276
Gbrowse : chr2L:10651977-10654510 (+) // 100.0 //
Probeset : 1624366_at
Accessions : protein= NP_609430;, nucleotide= NM_135586;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032276.
VDRC has 2 RNAi stocks for FBgn0032276 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 20 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.09Down
Crop2 ± 10 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut4 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.02Down
Fat body2 ± 00 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis1106 ± 344 of 414.20Up
Male accessory glands8 ± 30 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.03Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut2 ± 00 of 4 0.03Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body122 ± 681 of 4 1.60None
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass2 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly78 ± 84 of 4

Looking for FBgn0032276. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime