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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032282 through 18771 annotations produced 1 hits


Annotation Number : CG7299
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032282
Gbrowse : chr2L:10683760-10684407 (-) // 100.0 //
Probeset : 1630669_at
Accessions : protein= NP_609436;, nucleotide= NM_135592;
FlyMine data for FBgn0032282.
BDGP gene expression has embryonic in situ data for CG7299: 14 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0032282 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032282 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head1401 644 of 416.30Up
Eye3 00 of 4 0.04Down
Thoracicoabdominal ganglion3 00 of 4 0.00Down
Salivary gland20 30 of 4 0.24Down
Crop10 20 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule6 00 of 4 0.10Down
Hindgut6 00 of 4 0.10Down
Heart1 00 of 4 0.02Down
Fat body14 80 of 4 0.17Down
Ovary2 00 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands3 00 of 4 0.00Down
Virgin spermatheca13 00 of 4 0.16Down
Mated spermatheca14 40 of 4 0.16Down
Adult carcass6 30 of 4 0.10Down
Larval CNS9 13 of 4 0.11Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut70 174 of 4 0.82None
Larval tubule13 91 of 4 0.20Down
Larval hindgut4630 424 of 453.80Up
Larval fat body11 30 of 4 0.10Down
Larval trachea264 754 of 4 3.07Up
Larval carcass3943 5394 of 445.81Up
S2 cells (growing)10 02 of 4 0.12Down
Whole fly86 94 of 4

Looking for FBgn0032282. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime