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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032285 through 18771 annotations produced 3 hits



/// (CG17108 /// CG40263):

Annotation Number : CG40263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0058263
Gbrowse : chr2RHet:1291789-1335947 (-) // 100.0 //
Probeset : 1635560_at
Accessions : protein= NP_001015095; /// NP_001015096; /// NP_001104365;, nucleotide= NM_001015095; /// NM_001015096; /// NM_001110895;
FlyMine data for FBgn0058263.
VDRC has 1 RNAi stocks for FBgn0058263 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 144 of 4 2.70Up
Head60 34 of 4 1.40Up
Eye43 24 of 4 1.00None
Thoracicoabdominal ganglion112 94 of 4 2.60Up
Salivary gland95 14 of 4 2.18Up
Crop35 14 of 4 0.80Down
Midgut218 344 of 4 5.00Up
Tubule43 24 of 4 1.00None
Hindgut42 24 of 4 1.00None
Heart53 24 of 4 1.21Up
Fat body99 94 of 4 2.25Up
Ovary59 04 of 4 1.30Up
Testis10 11 of 4 0.20Down
Male accessory glands227 64 of 4 5.20Up
Virgin spermatheca68 44 of 4 1.57Up
Mated spermatheca88 14 of 4 2.00Up
Adult carcass73 74 of 4 1.70Up
Larval CNS41 34 of 4 0.94None
Larval Salivary gland44 24 of 4 1.01None
Larval midgut123 94 of 4 2.81Up
Larval tubule53 34 of 4 1.20None
Larval hindgut31 24 of 4 0.70Down
Larval fat body63 64 of 4 1.40Up
Larval trachea46 54 of 4 1.06None
Larval carcass29 24 of 4 0.67Down
S2 cells (growing)63 44 of 4 1.45Up
Whole fly44 23 of 4



(CG17108):

Annotation Number : CG17108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032285
Gbrowse : chr2L:10692937-10694103 (-) // 100.0 //
Probeset : 1635073_at
Accessions : protein= NP_609439;, nucleotide= NM_135595;
Interpro : 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase
FlyMine data for FBgn0032285.
BDGP gene expression has embryonic in situ data for CG17108: 4 pix of staining in 1 body parts.
BioGrid reports that CG17108 interacts with CG5987 CG2371 .
VDRC has 2 RNAi stocks for FBgn0032285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain578 754 of 4 0.30Down
Head3879 984 of 4 1.90Up
Eye5075 3004 of 4 2.51Up
Thoracicoabdominal ganglion510 434 of 4 0.30Down
Salivary gland72 103 of 4 0.04Down
Crop87 74 of 4 0.00Down
Midgut23 14 of 4 0.00Down
Tubule189 564 of 4 0.10Down
Hindgut1838 624 of 4 0.90None
Heart3598 3264 of 4 1.78Up
Fat body3298 4304 of 4 1.63Up
Ovary8 11 of 4 0.00Down
Testis26 14 of 4 0.00Down
Male accessory glands32 34 of 4 0.00Down
Virgin spermatheca4579 1914 of 4 2.26Up
Mated spermatheca3821 2024 of 4 1.89Up
Adult carcass5240 5274 of 4 2.60Up
Larval CNS13 24 of 4 0.01Down
Larval Salivary gland30 24 of 4 0.02Down
Larval midgut30 14 of 4 0.02Down
Larval tubule7 10 of 4 0.00Down
Larval hindgut673 2384 of 4 0.33Down
Larval fat body48 54 of 4 0.00Down
Larval trachea358 2154 of 4 0.18Down
Larval carcass106 264 of 4 0.05Down
S2 cells (growing)13 13 of 4 0.01Down
Whole fly2023 1114 of 4



/// (CG17108 /// CG30472):

Annotation Number : CG30472
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050472
Gbrowse : chr2R:11310686-11311320 (-) // 100.0 //
Probeset : 1631383_at
Accessions : protein= NP_609439; /// NP_725463;, nucleotide= NM_135595; /// NM_166095;
Interpro : 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase
FlyMine data for FBgn0050472.
VDRC has 2 RNAi stocks for FBgn0050472 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 10 of 4 0.10Down
Eye3 00 of 4 0.15Down
Thoracicoabdominal ganglion5 10 of 4 0.20Down
Salivary gland12 30 of 4 0.59None
Crop4 10 of 4 0.20Down
Midgut2 00 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut2 10 of 4 0.10Down
Heart3 11 of 4 0.15Down
Fat body7 42 of 4 0.32Down
Ovary1 00 of 4 0.10Down
Testis377 104 of 417.60Up
Male accessory glands7 21 of 4 0.40Down
Virgin spermatheca6 10 of 4 0.32Down
Mated spermatheca4 10 of 4 0.21Down
Adult carcass1 00 of 4 0.10Down
Larval CNS2 10 of 4 0.10Down
Larval Salivary gland1 00 of 4 0.08Down
Larval midgut2 10 of 4 0.11Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.14Down
Larval fat body87 434 of 4 4.10None
Larval trachea2 21 of 4 0.11Down
Larval carcass2 10 of 4 0.11Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly21 14 of 4

Looking for FBgn0032285. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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