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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032287 through 18771 annotations produced 1 hits



(CG6415):

Annotation Number : CG6415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032287
Gbrowse : chr2L:10703620-10704935 (+) // 100.0 //
Probeset : 1623839_at
Accessions : protein= NP_609441;, nucleotide= NM_135597;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay
Interpro : 0004047 // aminomethyltransferase activity // inferred from sequence or structural similarity /// 0004047 // aminomethyl
FlyMine data for FBgn0032287.
BDGP gene expression has embryonic in situ data for CG6415: 20 pix of staining in 3 body parts.
Homophila reports that CG6415 is a close match (2e-17) to human gene DMGDH;DMGDHD (NP_037523), a gene associated with Dimethylglycine dehydrogenase deficiency, 605850 (3).
VDRC has 3 RNAi stocks for FBgn0032287 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 04 of 4 0.20Down
Head259 ± 214 of 4 3.80Up
Eye86 ± 194 of 4 1.27None
Thoracicoabdominal ganglion12 ± 03 of 4 0.20Down
Salivary gland14 ± 01 of 4 0.21Down
Crop12 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.00Down
Tubule10 ± 12 of 4 0.20Down
Hindgut28 ± 34 of 4 0.40Down
Heart239 ± 104 of 4 3.52Up
Fat body639 ± 944 of 4 9.40Up
Ovary2 ± 00 of 4 0.00Down
Testis5 ± 10 of 4 0.10Down
Male accessory glands8 ± 00 of 4 0.10Down
Virgin spermatheca617 ± 414 of 4 9.07Up
Mated spermatheca445 ± 384 of 4 6.54Up
Adult carcass318 ± 284 of 4 4.70Up
Larval CNS3 ± 10 of 4 0.05Down
Larval Salivary gland17 ± 12 of 4 0.26Down
Larval midgut4 ± 10 of 4 0.07Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut22 ± 44 of 4 0.33Down
Larval fat body581 ± 774 of 4 8.50Up
Larval trachea12 ± 44 of 4 0.19Down
Larval carcass11 ± 10 of 4 0.17Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly68 ± 44 of 4

Looking for FBgn0032287. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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