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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032289 through 18771 annotations produced 1 hits



(CG6431):

Annotation Number : CG6431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032289
Gbrowse : chr2L:10725539-10728560 (+) // 100.0 //
Probeset : 1639559_at
Accessions : protein= NP_609442;, nucleotide= NM_135598;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0032289.
Homophila reports that CG6431 is a close match (4e-14) to human gene HDLCQ11;LIPD;LPL (NP_000228), a gene associated with Combined hyperlipidemia, familial, 144250 (3);Lipoprotein lipase deficiency, 238600 (3);[High density lipoprotein cholesterol level QTL 11] (3).
VDRC has 2 RNAi stocks for FBgn0032289 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.60Down
Head4 ± 10 of 4 0.70None
Eye2 ± 00 of 4 0.45Down
Thoracicoabdominal ganglion7 ± 12 of 4 1.30None
Salivary gland11 ± 40 of 4 2.08None
Crop8 ± 11 of 4 1.50None
Midgut9 ± 12 of 4 1.60None
Tubule5 ± 00 of 4 1.00None
Hindgut2 ± 00 of 4 0.50Down
Heart3 ± 10 of 4 0.57None
Fat body7 ± 23 of 4 1.24None
Ovary3 ± 02 of 4 0.60None
Testis3 ± 00 of 4 0.50Down
Male accessory glands9 ± 11 of 4 1.60Up
Virgin spermatheca5 ± 02 of 4 0.95None
Mated spermatheca5 ± 13 of 4 0.92None
Adult carcass7 ± 21 of 4 1.30None
Larval CNS5 ± 02 of 4 0.93None
Larval Salivary gland4 ± 10 of 4 0.71None
Larval midgut8 ± 23 of 4 1.42None
Larval tubule4 ± 01 of 4 0.70None
Larval hindgut2 ± 00 of 4 0.51Down
Larval fat body7 ± 21 of 4 1.30None
Larval trachea3 ± 31 of 4 0.57None
Larval carcass5 ± 00 of 4 0.95None
S2 cells (growing)1 ± 01 of 4 0.31Down
Whole fly5 ± 02 of 4

Looking for FBgn0032289. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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