Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032291 through 18771 annotations produced 2 hits



(CG17118):

Annotation Number : CG17118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032291
Gbrowse : chr2L:10730254-10731364 (+) // 100.0 //
Probeset : 1624420_at
Accessions : protein= NP_723611;, nucleotide= NM_164941;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0032291.
VDRC has 2 RNAi stocks for FBgn0032291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head5 10 of 4 0.10Down
Eye4 30 of 4 0.07Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland2 00 of 4 0.04Down
Crop3 10 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut3 00 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body7 30 of 4 0.10Down
Ovary1 00 of 4 0.00Down
Testis1001 444 of 413.50Up
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.05Down
Mated spermatheca5 10 of 4 0.07Down
Adult carcass3 10 of 4 0.00Down
Larval CNS5 10 of 4 0.07Down
Larval Salivary gland4 10 of 4 0.07Down
Larval midgut5 10 of 4 0.07Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut2 10 of 4 0.04Down
Larval fat body140 633 of 4 1.90None
Larval trachea4 51 of 4 0.06Down
Larval carcass5 10 of 4 0.08Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly74 74 of 4



/// (CG17118 /// CG6443):

Annotation Number : CG6443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032290
Gbrowse : chr2L:10728974-10730303 (+) // 100.0 //
Probeset : 1641336_at
Accessions : protein= NP_609443;, nucleotide= NM_135599;
Pathway : 0005634 // nucleus // inferred from sequence similarity
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence similarity /// 0005515
FlyMine data for FBgn0032290.
BioGrid reports that CG6443 interacts with CG7109 .
VDRC has 2 RNAi stocks for FBgn0032290 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 44 of 4 2.40Up
Head49 54 of 4 1.10None
Eye55 24 of 4 1.20None
Thoracicoabdominal ganglion88 44 of 4 1.90Up
Salivary gland64 44 of 4 1.40Up
Crop44 34 of 4 1.00None
Midgut37 22 of 4 0.80None
Tubule37 04 of 4 0.80Down
Hindgut41 34 of 4 0.90None
Heart34 34 of 4 0.75None
Fat body32 54 of 4 0.71None
Ovary61 34 of 4 1.30None
Testis96 24 of 4 2.10Up
Male accessory glands35 24 of 4 0.80None
Virgin spermatheca25 14 of 4 0.55Down
Mated spermatheca30 34 of 4 0.65Down
Adult carcass42 34 of 4 0.90None
Larval CNS57 64 of 4 1.26None
Larval Salivary gland40 34 of 4 0.88None
Larval midgut32 30 of 4 0.70None
Larval tubule42 24 of 4 0.90None
Larval hindgut41 14 of 4 0.90None
Larval fat body45 34 of 4 1.00None
Larval trachea44 44 of 4 0.96None
Larval carcass36 24 of 4 0.79None
S2 cells (growing)103 24 of 4 2.25Up
Whole fly45 54 of 4

Looking for FBgn0032291. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime