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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032299 through 18771 annotations produced 1 hits


Annotation Number : CG17127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032299
Gbrowse : chr2L:10770984-10771281 (+) // 100.0 //
Probeset : 1640469_at
Accessions : protein= NP_001137813; /// NP_609453;, nucleotide= NM_001144341; /// NM_135609;
FlyMine data for FBgn0032299.
BioGrid reports that CG17127 interacts with CG2194 CG2371 CG31029 CG3918 CG7338 CG9368 CG9871 .

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 21 of 4 0.80None
Head18 13 of 4 1.30None
Eye40 144 of 4 2.74None
Thoracicoabdominal ganglion10 21 of 4 0.70None
Salivary gland27 31 of 4 1.85Up
Crop8 20 of 4 0.50None
Midgut13 10 of 4 0.90None
Tubule4 00 of 4 0.30Down
Hindgut7 20 of 4 0.50None
Heart7 00 of 4 0.50None
Fat body12 81 of 4 0.81None
Ovary6 10 of 4 0.40Down
Testis5 10 of 4 0.40Down
Male accessory glands9 10 of 4 0.70None
Virgin spermatheca9 30 of 4 0.62None
Mated spermatheca8 20 of 4 0.60None
Adult carcass43 44 of 4 3.00Up
Larval CNS4 00 of 4 0.28Down
Larval Salivary gland5 10 of 4 0.34Down
Larval midgut4 10 of 4 0.32Down
Larval tubule6 10 of 4 0.40Down
Larval hindgut4 10 of 4 0.32Down
Larval fat body6 20 of 4 0.50None
Larval trachea6 20 of 4 0.45Down
Larval carcass7 10 of 4 0.50None
S2 cells (growing)6 30 of 4 0.45None
Whole fly14 23 of 4

Looking for FBgn0032299. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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