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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032303 through 18771 annotations produced 1 hits



(CG6508):

Annotation Number : CG6508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032303
Gbrowse : chr2L:10819122-10820394 (+) // 100.0 //
Probeset : 1626000_at
Accessions : protein= NP_609457;, nucleotide= NM_135613;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspart
FlyMine data for FBgn0032303.
Homophila reports that CG6508 is a close match (1e-54) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
VDRC has 1 RNAi stocks for FBgn0032303 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00None
Head2 00 of 4 0.00None
Eye1 00 of 4 0.03None
Thoracicoabdominal ganglion3 20 of 4 0.10None
Salivary gland1 00 of 4 0.03None
Crop3 10 of 4 0.10None
Midgut3 10 of 4 0.10None
Tubule1 00 of 4 0.00Down
Hindgut2 10 of 4 0.00None
Heart0 00 of 4 0.02None
Fat body3 20 of 4 0.06None
Ovary55 74 of 4 1.00None
Testis4 10 of 4 0.10None
Male accessory glands4 10 of 4 0.10None
Virgin spermatheca1 00 of 4 0.02None
Mated spermatheca3 10 of 4 0.06None
Adult carcass4 00 of 4 0.10None
Larval CNS0 00 of 4 0.01None
Larval Salivary gland3 10 of 4 0.07None
Larval midgut1 00 of 4 0.02None
Larval tubule3 10 of 4 0.10None
Larval hindgut0 00 of 4 0.01None
Larval fat body3 10 of 4 0.10None
Larval trachea1 00 of 4 0.02None
Larval carcass1 00 of 4 0.02None
S2 cells (growing)3 10 of 4 0.06None
Whole fly55 261 of 4

Looking for FBgn0032303. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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