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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032311 through 18771 annotations produced 1 hits



(CG12517):

Annotation Number : CG12517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032311
Gbrowse : chr2L:10870239-10870656 (+) // 100.0 //
Probeset : 1637338_at
Accessions : protein= NP_609465;, nucleotide= NM_135621;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032311.
BioGrid reports that CG12517 interacts with CG3622 .
VDRC has 1 RNAi stocks for FBgn0032311 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.20Down
Head4 ± 10 of 4 0.10Down
Eye5 ± 20 of 4 0.17Down
Thoracicoabdominal ganglion5 ± 00 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.26Down
Crop2 ± 10 of 4 0.10Down
Midgut3 ± 00 of 4 0.10Down
Tubule6 ± 00 of 4 0.20Down
Hindgut6 ± 10 of 4 0.20Down
Heart2 ± 10 of 4 0.09Down
Fat body7 ± 30 of 4 0.21Down
Ovary61 ± 34 of 4 1.80Up
Testis4 ± 01 of 4 0.10Down
Male accessory glands10 ± 32 of 4 0.30Down
Virgin spermatheca9 ± 11 of 4 0.29Down
Mated spermatheca16 ± 42 of 4 0.49Down
Adult carcass10 ± 20 of 4 0.30Down
Larval CNS4 ± 30 of 4 0.14Down
Larval Salivary gland5 ± 00 of 4 0.17Down
Larval midgut8 ± 30 of 4 0.26Down
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.07Down
Larval fat body5 ± 10 of 4 0.20Down
Larval trachea2 ± 10 of 4 0.06Down
Larval carcass4 ± 10 of 4 0.12Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly34 ± 44 of 4

Looking for FBgn0032311. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime