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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032313 through 18771 annotations produced 1 hits



(CG14070):

Annotation Number : CG14070
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032313
Gbrowse : chr2L:10900883-10901695 (-) // 100.0 //
Probeset : 1627699_at
Accessions : protein= NP_609467;, nucleotide= NM_135623;
FlyMine data for FBgn0032313.
VDRC has 2 RNAi stocks for FBgn0032313 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 00 of 4 0.10Down
Eye3 10 of 4 0.14Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland8 20 of 4 0.32Down
Crop1 00 of 4 0.10Down
Midgut4 11 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut3 00 of 4 0.20Down
Heart3 00 of 4 0.14Down
Fat body6 30 of 4 0.25Down
Ovary2 00 of 4 0.10Down
Testis316 164 of 412.40Up
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca3 00 of 4 0.14Down
Mated spermatheca3 10 of 4 0.13Down
Adult carcass7 30 of 4 0.30Down
Larval CNS3 00 of 4 0.12Down
Larval Salivary gland6 31 of 4 0.27Down
Larval midgut5 00 of 4 0.19Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.08Down
Larval fat body62 283 of 4 2.50None
Larval trachea3 51 of 4 0.14Down
Larval carcass7 12 of 4 0.31Down
S2 cells (growing)2 00 of 4 0.10Down
Whole fly25 24 of 4

Looking for FBgn0032313. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime