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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032322 through 18771 annotations produced 1 hits



(CG16743):

Annotation Number : CG16743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032322
Gbrowse : chr2L:10972579-10973341 (+) // 100.0 //
Probeset : 1630088_at
Accessions : protein= NP_609476;, nucleotide= NM_135632;
FlyMine data for FBgn0032322.
BDGP gene expression has embryonic in situ data for CG16743: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032322 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain682 ± 304 of 4 3.80Up
Head586 ± 784 of 4 3.20Up
Eye270 ± 884 of 4 1.49None
Thoracicoabdominal ganglion1167 ± 454 of 4 6.40Up
Salivary gland25 ± 10 of 4 0.14Down
Crop18 ± 20 of 4 0.10Down
Midgut6 ± 20 of 4 0.00Down
Tubule179 ± 594 of 4 1.00None
Hindgut93 ± 54 of 4 0.50Down
Heart1301 ± 594 of 4 7.18Up
Fat body2743 ± 2094 of 415.13Up
Ovary3 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands26 ± 112 of 4 0.10Down
Virgin spermatheca370 ± 284 of 4 2.04Up
Mated spermatheca441 ± 164 of 4 2.43Up
Adult carcass919 ± 714 of 4 5.10Up
Larval CNS128 ± 514 of 4 0.71None
Larval Salivary gland44 ± 64 of 4 0.25Down
Larval midgut9 ± 10 of 4 0.05Down
Larval tubule655 ± 264 of 4 3.60Up
Larval hindgut35 ± 44 of 4 0.20Down
Larval fat body1700 ± 614 of 4 9.40Up
Larval trachea30 ± 124 of 4 0.17Down
Larval carcass22 ± 42 of 4 0.13Down
S2 cells (growing)371 ± 154 of 4 2.05Up
Whole fly181 ± 144 of 4

Looking for FBgn0032322. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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