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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032341 through 18771 annotations produced 1 hits

CG6192 (Reps):

Annotation Number : CG6192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032341
Gbrowse : chr2L:11100958-11106638 (-) // 100.0 //
Probeset : 1637819_at
Accessions : protein= NP_609487;, nucleotide= NM_135643;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0032341.
BDGP gene expression has embryonic in situ data for CG6192: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032341 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain106 114 of 4 1.80Up
Head56 54 of 4 0.90None
Eye27 14 of 4 0.46Down
Thoracicoabdominal ganglion80 44 of 4 1.30Up
Salivary gland80 74 of 4 1.35None
Crop76 64 of 4 1.30None
Midgut36 24 of 4 0.60Down
Tubule49 34 of 4 0.80Down
Hindgut57 44 of 4 1.00None
Heart25 34 of 4 0.42Down
Fat body58 104 of 4 0.97None
Ovary138 54 of 4 2.30Up
Testis18 24 of 4 0.30Down
Male accessory glands132 94 of 4 2.20Up
Virgin spermatheca87 214 of 4 1.47None
Mated spermatheca102 104 of 4 1.71Up
Adult carcass32 14 of 4 0.50Down
Larval CNS159 254 of 4 2.68Up
Larval Salivary gland193 134 of 4 3.24Up
Larval midgut46 04 of 4 0.77Down
Larval tubule196 94 of 4 3.30Up
Larval hindgut88 74 of 4 1.49Up
Larval fat body111 154 of 4 1.90Up
Larval trachea68 44 of 4 1.16None
Larval carcass94 134 of 4 1.59None
S2 cells (growing)165 64 of 4 2.77Up
Whole fly59 34 of 4

Looking for FBgn0032341. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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