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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032343 through 18771 annotations produced 1 hits



(CG6201):

Annotation Number : CG6201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032343
Gbrowse : chr2L:11110556-11113063 (-) // 100.0 //
Probeset : 1631794_at
Accessions : protein= NP_609489;, nucleotide= NM_135645;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003940 // L-iduronidase activity // inferred
FlyMine data for FBgn0032343.
Homophila reports that CG6201 is a close match (2e-61) to human gene IDA;IDUA (NP_000194), a gene associated with Mucopolysaccharidosis Ih, 607014 (3);Mucopolysaccharidosis Ih/s, 607015 (3);Mucopolysaccharidosis Is, 607016 (3).
VDRC has 3 RNAi stocks for FBgn0032343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 ± 44 of 4 6.60Up
Head43 ± 34 of 4 2.10Up
Eye14 ± 33 of 4 0.70None
Thoracicoabdominal ganglion79 ± 14 of 4 3.80Up
Salivary gland10 ± 30 of 4 0.49Down
Crop5 ± 20 of 4 0.20Down
Midgut7 ± 20 of 4 0.30Down
Tubule8 ± 10 of 4 0.40Down
Hindgut7 ± 20 of 4 0.30Down
Heart28 ± 14 of 4 1.39Up
Fat body71 ± 34 of 4 3.44Up
Ovary38 ± 04 of 4 1.80Up
Testis5 ± 11 of 4 0.20Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca132 ± 24 of 4 6.37Up
Mated spermatheca88 ± 54 of 4 4.23Up
Adult carcass32 ± 71 of 4 1.60None
Larval CNS83 ± 114 of 4 4.03Up
Larval Salivary gland11 ± 21 of 4 0.56Down
Larval midgut16 ± 60 of 4 0.81None
Larval tubule23 ± 13 of 4 1.10None
Larval hindgut17 ± 22 of 4 0.86None
Larval fat body394 ± 274 of 419.00Up
Larval trachea4 ± 00 of 4 0.23Down
Larval carcass2 ± 10 of 4 0.11Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly20 ± 02 of 4

Looking for FBgn0032343. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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