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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032350 through 18771 annotations produced 1 hits



/// CG6287 (CG6287 /// DsimGD22186):

Annotation Number : CG6287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032350
Gbrowse : chr2L:11151505-11155716 (-) // 100.0 //
Probeset : 1629207_at
Accessions : protein= NP_609496;, nucleotide= NM_135652;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004617 // phosphoglycerate dehydrogenase acti
FlyMine data for FBgn0032350.
BDGP gene expression has embryonic in situ data for CG6287: 4 pix of staining in 1 body parts.
Homophila reports that CG6287 is a close match (2e-20) to human gene GLXR;GRHPR (NP_036335), a gene associated with Hyperoxaluria, primary, type II, 260000 (3).
BioGrid reports that CG6287 interacts with CG15483 CG2061 CG32772 CG4697 CG5149 CG6147 CG7387 CG8346 CG8440 CG8609 CG33519 .
VDRC has 3 RNAi stocks for FBgn0032350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain509 ± 184 of 4 0.80Down
Head1217 ± 294 of 4 2.00Up
Eye1201 ± 604 of 4 1.93Up
Thoracicoabdominal ganglion708 ± 74 of 4 1.10Up
Salivary gland1381 ± 444 of 4 2.22Up
Crop911 ± 134 of 4 1.50Up
Midgut561 ± 154 of 4 0.90Down
Tubule85 ± 104 of 4 0.10Down
Hindgut608 ± 84 of 4 1.00None
Heart1322 ± 684 of 4 2.13Up
Fat body1827 ± 1534 of 4 2.94Up
Ovary730 ± 184 of 4 1.20Up
Testis127 ± 44 of 4 0.20Down
Male accessory glands887 ± 274 of 4 1.40Up
Virgin spermatheca3020 ± 964 of 4 4.86Up
Mated spermatheca2254 ± 974 of 4 3.62Up
Adult carcass1307 ± 364 of 4 2.10Up
Larval CNS225 ± 114 of 4 0.36Down
Larval Salivary gland54 ± 43 of 4 0.09Down
Larval midgut213 ± 54 of 4 0.34Down
Larval tubule56 ± 44 of 4 0.10Down
Larval hindgut227 ± 264 of 4 0.37Down
Larval fat body2411 ± 2924 of 4 3.90Up
Larval trachea378 ± 734 of 4 0.61Down
Larval carcass318 ± 1134 of 4 0.51None
S2 cells (growing)9 ± 00 of 4 0.01Down
Whole fly622 ± 114 of 4

Looking for FBgn0032350. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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