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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032354 through 18771 annotations produced 1 hits



(CG4788):

Annotation Number : CG4788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032354
Gbrowse : chr2L:11179040-11180430 (+) // 100.0 //
Probeset : 1628321_at
Accessions : protein= NP_609499;, nucleotide= NM_135655;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032354.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 14 of 4 0.40Down
Head29 ± 24 of 4 0.20Down
Eye36 ± 34 of 4 0.31Down
Thoracicoabdominal ganglion41 ± 24 of 4 0.40Down
Salivary gland24 ± 43 of 4 0.21Down
Crop64 ± 14 of 4 0.60Down
Midgut19 ± 14 of 4 0.20Down
Tubule16 ± 13 of 4 0.10Down
Hindgut33 ± 14 of 4 0.30Down
Heart18 ± 14 of 4 0.16Down
Fat body22 ± 64 of 4 0.20Down
Ovary321 ± 54 of 4 2.80Up
Testis49 ± 24 of 4 0.40Down
Male accessory glands35 ± 24 of 4 0.30Down
Virgin spermatheca24 ± 24 of 4 0.21Down
Mated spermatheca32 ± 24 of 4 0.28Down
Adult carcass20 ± 43 of 4 0.20Down
Larval CNS133 ± 44 of 4 1.15None
Larval Salivary gland28 ± 24 of 4 0.24Down
Larval midgut13 ± 04 of 4 0.12Down
Larval tubule25 ± 24 of 4 0.20Down
Larval hindgut38 ± 24 of 4 0.33Down
Larval fat body27 ± 64 of 4 0.20Down
Larval trachea70 ± 84 of 4 0.61Down
Larval carcass31 ± 14 of 4 0.27Down
S2 cells (growing)55 ± 14 of 4 0.48Down
Whole fly116 ± 64 of 4

Looking for FBgn0032354. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime