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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032358 through 18771 annotations produced 1 hits



CG4851 (Ppt2):

Annotation Number : CG4851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032358
Gbrowse : chr2L:11280313-11281929 (+) // 100.0 //
Probeset : 1629195_at
Accessions : protein= NP_609500;, nucleotide= NM_135656;
Pathway : 0005764 // lysosome // inferred from direct assay /// 0005764 // lysosome // inferred from electronic annotation
Interpro : 0008474 // palmitoyl-(protein) hydrolase activity // inferred from sequence or structural similarity /// 0008474 // palm
FlyMine data for FBgn0032358.
BDGP gene expression has embryonic in situ data for CG4851: 4 pix of staining in 1 body parts.
Homophila reports that CG4851 is a close match (2e-19) to human gene CLN1;PPT1 (NP_000301), a gene associated with Ceroid lipofuscinosis, neuronal, variant juvenile type, with granular osmiophilic deposits (3);Ceroid lipofuscinosis, neuronal-1, infantile, 256730 (3).
TRiP has 1 RNAi stocks for FBgn0032358 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032358 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 ± 44 of 4 1.30Up
Head264 ± 64 of 4 2.10Up
Eye353 ± 244 of 4 2.86Up
Thoracicoabdominal ganglion173 ± 24 of 4 1.40Up
Salivary gland82 ± 134 of 4 0.66Down
Crop324 ± 124 of 4 2.60Up
Midgut108 ± 44 of 4 0.90None
Tubule147 ± 74 of 4 1.20Up
Hindgut189 ± 64 of 4 1.50Up
Heart730 ± 444 of 4 5.90Up
Fat body598 ± 244 of 4 4.84Up
Ovary65 ± 14 of 4 0.50Down
Testis32 ± 24 of 4 0.30Down
Male accessory glands98 ± 64 of 4 0.80Down
Virgin spermatheca773 ± 324 of 4 6.26Up
Mated spermatheca501 ± 394 of 4 4.05Up
Adult carcass478 ± 284 of 4 3.90Up
Larval CNS83 ± 34 of 4 0.67Down
Larval Salivary gland33 ± 34 of 4 0.27Down
Larval midgut164 ± 394 of 4 1.33None
Larval tubule132 ± 44 of 4 1.10None
Larval hindgut88 ± 124 of 4 0.72None
Larval fat body269 ± 634 of 4 2.20None
Larval trachea116 ± 54 of 4 0.94None
Larval carcass157 ± 284 of 4 1.27None
S2 cells (growing)38 ± 24 of 4 0.31Down
Whole fly123 ± 54 of 4

Looking for FBgn0032358. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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