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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032368 through 18771 annotations produced 1 hits



CG6589 (spag4):

Annotation Number : CG6589
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032368
Gbrowse : chr2L:11610664-11611664 (-) // 100.0 //
Probeset : 1631384_at
Accessions : protein= NP_609510;, nucleotide= NM_135666;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005879 // axonemal microtubule // inferred from direct assay /// 0
FlyMine data for FBgn0032368.
VDRC has 3 RNAi stocks for FBgn0032368 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.90None
Head3 ± 10 of 4 1.20None
Eye1 ± 00 of 4 0.75None
Thoracicoabdominal ganglion3 ± 20 of 4 1.20None
Salivary gland3 ± 10 of 4 1.36None
Crop1 ± 00 of 4 0.60None
Midgut1 ± 00 of 4 0.70None
Tubule2 ± 00 of 4 0.80None
Hindgut1 ± 00 of 4 0.40None
Heart0 ± 00 of 4 0.29None
Fat body1 ± 00 of 4 0.45None
Ovary0 ± 00 of 4 0.40None
Testis48 ± 14 of 419.40Up
Male accessory glands1 ± 00 of 4 0.80None
Virgin spermatheca2 ± 10 of 4 1.14None
Mated spermatheca1 ± 00 of 4 0.54None
Adult carcass1 ± 00 of 4 0.60None
Larval CNS1 ± 00 of 4 0.53None
Larval Salivary gland1 ± 00 of 4 0.47None
Larval midgut1 ± 00 of 4 0.59None
Larval tubule3 ± 00 of 4 1.20None
Larval hindgut0 ± 00 of 4 0.33None
Larval fat body7 ± 31 of 4 2.80None
Larval trachea0 ± 00 of 4 0.22None
Larval carcass0 ± 00 of 4 0.34None
S2 cells (growing)0 ± 00 of 4 0.27None
Whole fly2 ± 00 of 4

Looking for FBgn0032368. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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