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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032370 through 18771 annotations produced 1 hits


(CG12307):

Annotation Number : CG12307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032370
Gbrowse : chr2L:11651390-11652001 (-) // 100.0 //
Probeset : 1628711_at
Accessions : protein= NP_609512;, nucleotide= NM_135668;
FlyMine data for FBgn0032370.
VDRC has 3 RNAi stocks for FBgn0032370 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head6 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland14 ± 20 of 4 0.09Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut4 ± 20 of 4 0.00Down
Heart4 ± 10 of 4 0.02Down
Fat body6 ± 40 of 4 0.04Down
Ovary2 ± 00 of 4 0.00Down
Testis1688 ± 514 of 410.00Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.03Down
Mated spermatheca5 ± 10 of 4 0.03Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.03Down
Larval Salivary gland7 ± 00 of 4 0.05Down
Larval midgut3 ± 20 of 4 0.02Down
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.02Down
Larval fat body155 ± 744 of 4 0.90None
Larval trachea10 ± 132 of 4 0.06Down
Larval carcass6 ± 10 of 4 0.04Down
S2 cells (growing)5 ± 10 of 4 0.03Down
Whole fly168 ± 104 of 4

Looking for FBgn0032370. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime