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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032371 through 18771 annotations produced 1 hits



(CG4983):

Annotation Number : CG4983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032371
Gbrowse : chr2L:11652447-11653843 (+) // 99.7 //
Probeset : 1637126_at
Accessions : protein= NP_609513;, nucleotide= NM_135669;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032371.
BDGP gene expression has embryonic in situ data for CG4983: 4 pix of staining in 1 body parts.
BioGrid reports that CG4983 interacts with CG6174 .
VDRC has 3 RNAi stocks for FBgn0032371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion7 ± 30 of 4 0.00Down
Salivary gland19 ± 11 of 4 0.08Down
Crop5 ± 10 of 4 0.00Down
Midgut7 ± 20 of 4 0.00Down
Tubule5 ± 00 of 4 0.00Down
Hindgut8 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body11 ± 30 of 4 0.05Down
Ovary3 ± 10 of 4 0.00Down
Testis2113 ± 574 of 4 8.70Up
Male accessory glands10 ± 00 of 4 0.00Down
Virgin spermatheca7 ± 00 of 4 0.03Down
Mated spermatheca12 ± 14 of 4 0.05Down
Adult carcass20 ± 31 of 4 0.10Down
Larval CNS6 ± 31 of 4 0.03Down
Larval Salivary gland5 ± 20 of 4 0.02Down
Larval midgut8 ± 10 of 4 0.03Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut7 ± 00 of 4 0.03Down
Larval fat body235 ± 1244 of 4 1.00None
Larval trachea14 ± 171 of 4 0.06Down
Larval carcass7 ± 11 of 4 0.03Down
S2 cells (growing)6 ± 10 of 4 0.03Down
Whole fly242 ± 194 of 4

Looking for FBgn0032371. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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