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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032372 through 18771 annotations produced 1 hits



(CG4988):

Annotation Number : CG4988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032372
Gbrowse : chr2L:11694855-11696072 (+) // 100.0 //
Probeset : 1636453_at
Accessions : protein= NP_609514;, nucleotide= NM_135670;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003978 // UDP-glucose 4-epimerase activity //
FlyMine data for FBgn0032372.
VDRC has 1 RNAi stocks for FBgn0032372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 20 of 4 0.10Down
Head8 10 of 4 0.10Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion7 00 of 4 0.10Down
Salivary gland21 50 of 4 0.27Down
Crop17 20 of 4 0.20Down
Midgut22 21 of 4 0.30Down
Tubule13 10 of 4 0.20Down
Hindgut13 10 of 4 0.20Down
Heart9 00 of 4 0.11Down
Fat body20 61 of 4 0.25Down
Ovary6 10 of 4 0.10Down
Testis1021 164 of 412.60Up
Male accessory glands11 30 of 4 0.10Down
Virgin spermatheca8 20 of 4 0.11Down
Mated spermatheca10 50 of 4 0.13Down
Adult carcass20 30 of 4 0.30Down
Larval CNS6 20 of 4 0.08Down
Larval Salivary gland14 10 of 4 0.18Down
Larval midgut20 13 of 4 0.25Down
Larval tubule10 10 of 4 0.10Down
Larval hindgut11 00 of 4 0.15Down
Larval fat body66 193 of 4 0.80None
Larval trachea6 40 of 4 0.08Down
Larval carcass16 10 of 4 0.21Down
S2 cells (growing)10 10 of 4 0.13Down
Whole fly81 84 of 4

Looking for FBgn0032372. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime