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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032373 through 18771 annotations produced 1 hits



Vacuolar H[+] ATPase subunit 100-5 (Vha100-5):

Annotation Number : CG12602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032373
Gbrowse : chr2L:11738951-11744161 (+) // 100.0 //
Probeset : 1636474_at
Accessions : protein= NP_609515;, nucleotide= NM_135671;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0033177 // proton-transporting two-sector ATPase compl
FlyMine data for FBgn0032373.
Homophila reports that CG12602 is a close match (4e-70) to human gene OC116;OPTB1;TCIRG1;TIRC7 (NP_006044), a gene associated with Osteopetrosis, recessive 1, 259700 (3).
TRiP has 1 RNAi stocks for FBgn0032373 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032373 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.00Down
Head7 ± 21 of 4 0.00Down
Eye4 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.04Down
Crop8 ± 21 of 4 0.00Down
Midgut1519 ± 464 of 4 8.40Up
Tubule419 ± 1314 of 4 2.30None
Hindgut423 ± 304 of 4 2.30Up
Heart7 ± 02 of 4 0.04Down
Fat body16 ± 54 of 4 0.09Down
Ovary9 ± 03 of 4 0.00Down
Testis13 ± 23 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca11 ± 03 of 4 0.06Down
Mated spermatheca13 ± 12 of 4 0.08Down
Adult carcass14 ± 42 of 4 0.10Down
Larval CNS3 ± 21 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut2104 ± 914 of 411.64Up
Larval tubule636 ± 314 of 4 3.50Up
Larval hindgut1316 ± 494 of 4 7.28Up
Larval fat body12 ± 21 of 4 0.10Down
Larval trachea6 ± 23 of 4 0.04Down
Larval carcass4 ± 10 of 4 0.02Down
S2 cells (growing)5 ± 00 of 4 0.03Down
Whole fly180 ± 204 of 4

Looking for FBgn0032373. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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