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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032387 through 18771 annotations produced 1 hits



chr2L:11982002-11984250 (+) // 100.0 // ():

Annotation Number : CG16965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635812_at
Accessions : protein= , nucleotide= NP_609528;
Pathway : 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inf
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 24 of 4 0.30Down
Head148 ± 214 of 4 1.40None
Eye52 ± 154 of 4 0.49Down
Thoracicoabdominal ganglion10 ± 13 of 4 0.10Down
Salivary gland11 ± 31 of 4 0.11Down
Crop10 ± 11 of 4 0.10Down
Midgut1491 ± 524 of 413.90Up
Tubule8 ± 01 of 4 0.10Down
Hindgut12 ± 14 of 4 0.10Down
Heart116 ± 64 of 4 1.08None
Fat body140 ± 104 of 4 1.31Up
Ovary4 ± 01 of 4 0.00Down
Testis15 ± 24 of 4 0.10Down
Male accessory glands19 ± 34 of 4 0.20Down
Virgin spermatheca412 ± 504 of 4 3.84Up
Mated spermatheca115 ± 284 of 4 1.08None
Adult carcass95 ± 74 of 4 0.90None
Larval CNS4 ± 12 of 4 0.04Down
Larval Salivary gland4 ± 10 of 4 0.05Down
Larval midgut165 ± 334 of 4 1.54None
Larval tubule6 ± 00 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.04Down
Larval fat body12 ± 12 of 4 0.10Down
Larval trachea5 ± 02 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.04Down
S2 cells (growing)75 ± 14 of 4 0.70Down
Whole fly107 ± 74 of 4

Looking for FBgn0032387. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime