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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032390 through 18771 annotations produced 1 hits



dim gamma-tubulin 2 (dgt2):

Annotation Number : CG16969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032390
Gbrowse : chr2L:11989963-11990837 (+) // 100.0 //
Probeset : 1639063_at
Accessions : protein= NP_609531;, nucleotide= NM_135687;
Pathway : 0005819 // spindle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from direct a
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from dir
FlyMine data for FBgn0032390.
BDGP gene expression has embryonic in situ data for CG16969: 10 pix of staining in 3 body parts.
BioGrid reports that CG16969 interacts with CG4071 CG8365 CG16969 CG18212 CG6096 CG6315 CG8291 .
TRiP has 1 RNAi stocks for FBgn0032390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 0.20Down
Head41 ± 24 of 4 0.40Down
Eye99 ± 34 of 4 0.91None
Thoracicoabdominal ganglion12 ± 23 of 4 0.10Down
Salivary gland12 ± 50 of 4 0.11Down
Crop41 ± 14 of 4 0.40Down
Midgut21 ± 33 of 4 0.20Down
Tubule47 ± 24 of 4 0.40Down
Hindgut39 ± 24 of 4 0.40Down
Heart12 ± 11 of 4 0.12Down
Fat body2 ± 10 of 4 0.02Down
Ovary214 ± 14 of 4 2.00Up
Testis73 ± 24 of 4 0.70Down
Male accessory glands30 ± 24 of 4 0.30Down
Virgin spermatheca9 ± 12 of 4 0.09Down
Mated spermatheca13 ± 23 of 4 0.12Down
Adult carcass23 ± 33 of 4 0.20Down
Larval CNS157 ± 114 of 4 1.45Up
Larval Salivary gland68 ± 24 of 4 0.63Down
Larval midgut13 ± 11 of 4 0.12Down
Larval tubule27 ± 14 of 4 0.20Down
Larval hindgut51 ± 14 of 4 0.47Down
Larval fat body19 ± 43 of 4 0.20Down
Larval trachea133 ± 104 of 4 1.22Up
Larval carcass39 ± 14 of 4 0.36Down
S2 cells (growing)180 ± 54 of 4 1.66Up
Whole fly109 ± 04 of 4

Looking for FBgn0032390. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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