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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032394 through 18771 annotations produced 1 hits



(CG6746):

Annotation Number : CG6746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032394
Gbrowse : chr2L:12001233-12002276 (-) // 100.0 //
Probeset : 1630398_at
Accessions : protein= NP_609534;, nucleotide= NM_135690;
FlyMine data for FBgn0032394.
VDRC has 2 RNAi stocks for FBgn0032394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 54 of 4 0.20Down
Head657 ± 354 of 4 0.80Down
Eye438 ± 414 of 4 0.50Down
Thoracicoabdominal ganglion178 ± 204 of 4 0.20Down
Salivary gland248 ± 94 of 4 0.29Down
Crop3891 ± 2034 of 4 4.50Up
Midgut813 ± 244 of 4 0.90None
Tubule551 ± 124 of 4 0.60Down
Hindgut2497 ± 994 of 4 2.90Up
Heart4345 ± 2114 of 4 5.00Up
Fat body3975 ± 3904 of 4 4.58Up
Ovary224 ± 54 of 4 0.30Down
Testis115 ± 14 of 4 0.10Down
Male accessory glands245 ± 54 of 4 0.30Down
Virgin spermatheca1273 ± 434 of 4 1.47Up
Mated spermatheca1148 ± 564 of 4 1.32Up
Adult carcass4082 ± 724 of 4 4.70Up
Larval CNS234 ± 74 of 4 0.27Down
Larval Salivary gland285 ± 134 of 4 0.33Down
Larval midgut377 ± 224 of 4 0.43Down
Larval tubule240 ± 124 of 4 0.30Down
Larval hindgut218 ± 54 of 4 0.25Down
Larval fat body367 ± 354 of 4 0.40Down
Larval trachea293 ± 224 of 4 0.34Down
Larval carcass510 ± 204 of 4 0.59Down
S2 cells (growing)452 ± 114 of 4 0.52Down
Whole fly868 ± 664 of 4

Looking for FBgn0032394. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime