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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032397 through 18771 annotations produced 1 hits



Translocase of outer membrane 70 (Tom70):

Annotation Number : CG6756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032397
Gbrowse : chr2L:12036002-12038543 (-) // 100.0 //
Probeset : 1639093_s_at
Accessions : protein= NP_609536; /// NP_723711; /// NP_723712;, nucleotide= NM_135692; /// NM_164985; /// NM_164986;
Pathway : 0005742 // mitochondrial outer membrane translocase complex // inferred from sequence or structural similarity
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0032397.
BDGP gene expression has embryonic in situ data for CG6756: 16 pix of staining in 21 body parts.
VDRC has 1 RNAi stocks for FBgn0032397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 ± 14 of 4 0.70Down
Head64 ± 34 of 4 0.30Down
Eye62 ± 24 of 4 0.30Down
Thoracicoabdominal ganglion160 ± 74 of 4 0.80Down
Salivary gland53 ± 44 of 4 0.26Down
Crop44 ± 14 of 4 0.20Down
Midgut54 ± 24 of 4 0.30Down
Tubule77 ± 84 of 4 0.40Down
Hindgut112 ± 34 of 4 0.50Down
Heart46 ± 24 of 4 0.22Down
Fat body53 ± 104 of 4 0.25Down
Ovary315 ± 54 of 4 1.50Up
Testis1135 ± 374 of 4 5.40Up
Male accessory glands70 ± 14 of 4 0.30Down
Virgin spermatheca50 ± 54 of 4 0.24Down
Mated spermatheca65 ± 34 of 4 0.31Down
Adult carcass52 ± 54 of 4 0.30Down
Larval CNS126 ± 104 of 4 0.61Down
Larval Salivary gland80 ± 24 of 4 0.38Down
Larval midgut72 ± 84 of 4 0.34Down
Larval tubule38 ± 14 of 4 0.20Down
Larval hindgut94 ± 84 of 4 0.45Down
Larval fat body133 ± 554 of 4 0.60None
Larval trachea77 ± 144 of 4 0.37Down
Larval carcass64 ± 84 of 4 0.31Down
S2 cells (growing)204 ± 44 of 4 0.98None
Whole fly209 ± 154 of 4

Looking for FBgn0032397. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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