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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032402 through 18771 annotations produced 1 hits



(CG14945):

Annotation Number : CG14945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032402
Gbrowse : chr2L:12049422-12052049 (+) // 100.0 //
Probeset : 1633227_s_at
Accessions : protein= NP_609541; /// NP_723716;, nucleotide= NM_135697; /// NM_164987;
Interpro : 0004629 // phospholipase C activity // inferred from electronic annotation /// 0008081 // phosphoric diester hydrolase a
FlyMine data for FBgn0032402.
BDGP gene expression has embryonic in situ data for CG14945: 19 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0032402 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain743 144 of 4 8.60Up
Head355 224 of 4 4.10Up
Eye186 74 of 4 2.17Up
Thoracicoabdominal ganglion560 124 of 4 6.50Up
Salivary gland59 62 of 4 0.69Down
Crop30 24 of 4 0.40Down
Midgut29 13 of 4 0.30Down
Tubule551 1144 of 4 6.40Up
Hindgut29 14 of 4 0.30Down
Heart179 114 of 4 2.09Up
Fat body359 404 of 4 4.18Up
Ovary55 44 of 4 0.60Down
Testis57 34 of 4 0.70Down
Male accessory glands46 34 of 4 0.50Down
Virgin spermatheca314 74 of 4 3.65Up
Mated spermatheca310 314 of 4 3.61Up
Adult carcass198 74 of 4 2.30Up
Larval CNS167 204 of 4 1.95Up
Larval Salivary gland52 51 of 4 0.61Down
Larval midgut26 42 of 4 0.31Down
Larval tubule2480 664 of 428.80Up
Larval hindgut92 94 of 4 1.07None
Larval fat body29 23 of 4 0.30Down
Larval trachea52 74 of 4 0.61Down
Larval carcass18 24 of 4 0.21Down
S2 cells (growing)197 24 of 4 2.30Up
Whole fly86 74 of 4

Looking for FBgn0032402. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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