Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032404 through 18771 annotations produced 2 hits



/// Ribosomal protein L7-like (CG34164 /// RpL7-like):

Annotation Number : HDC02124
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032404 /// FBgn0085193
Gbrowse : chr2L:12057892-12058214 (+) // 100.0 //
Probeset : 1637347_at
Accessions : protein= NP_001097151; /// NP_001097152; /// NP_609543;, nucleotide= NM_001103681; /// NM_001103682; /// NM_135699;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0032404 /// FBgn0085193.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.50None
Head4 10 of 4 0.90None
Eye1 00 of 4 0.39None
Thoracicoabdominal ganglion4 20 of 4 1.00None
Salivary gland3 00 of 4 0.69None
Crop2 00 of 4 0.60None
Midgut11 30 of 4 2.60None
Tubule6 00 of 4 1.60Up
Hindgut2 00 of 4 0.50None
Heart4 10 of 4 1.12None
Fat body4 20 of 4 0.91None
Ovary5 10 of 4 1.30None
Testis1 00 of 4 0.30None
Male accessory glands8 10 of 4 1.90None
Virgin spermatheca4 00 of 4 1.03None
Mated spermatheca2 00 of 4 0.51None
Adult carcass7 20 of 4 1.80None
Larval CNS4 30 of 4 1.06None
Larval Salivary gland9 20 of 4 2.18None
Larval midgut4 10 of 4 1.11None
Larval tubule2 10 of 4 0.60None
Larval hindgut5 20 of 4 1.30None
Larval fat body6 20 of 4 1.50None
Larval trachea5 30 of 4 1.33None
Larval carcass4 00 of 4 0.93None
S2 cells (growing)26 10 of 4 6.08Up
Whole fly4 10 of 4



/// Ribosomal protein L7-like (CG34164 /// RpL7-like):

Annotation Number : CG5317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032404 /// FBgn0085193
Gbrowse : chr2L:12056323-12057416 (+) // 100.0 //
Probeset : 1637689_at
Accessions : protein= NP_001097151; /// NP_001097152; /// NP_609543;, nucleotide= NM_001103681; /// NM_001103682; /// NM_135699;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0032404 /// FBgn0085193.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 104 of 4 0.40Down
Head398 194 of 4 0.70Down
Eye815 264 of 4 1.35Up
Thoracicoabdominal ganglion487 154 of 4 0.80Down
Salivary gland472 414 of 4 0.78Down
Crop454 194 of 4 0.80Down
Midgut451 114 of 4 0.70Down
Tubule396 94 of 4 0.70Down
Hindgut398 64 of 4 0.70Down
Heart722 504 of 4 1.20None
Fat body727 634 of 4 1.21Up
Ovary819 114 of 4 1.40Up
Testis218 94 of 4 0.40Down
Male accessory glands821 634 of 4 1.40Up
Virgin spermatheca1162 844 of 4 1.93Up
Mated spermatheca1258 794 of 4 2.09Up
Adult carcass493 214 of 4 0.80Down
Larval CNS608 404 of 4 1.01None
Larval Salivary gland631 744 of 4 1.05None
Larval midgut276 84 of 4 0.46Down
Larval tubule403 104 of 4 0.70Down
Larval hindgut500 264 of 4 0.83Down
Larval fat body317 334 of 4 0.50Down
Larval trachea1103 734 of 4 1.83Up
Larval carcass662 454 of 4 1.10None
S2 cells (growing)1290 204 of 4 2.14Up
Whole fly602 184 of 4

Looking for FBgn0032404. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime