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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032405 through 18771 annotations produced 1 hits



(CG14946):

Annotation Number : CG14946
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032405
Gbrowse : chr2L:12063606-12064739 (-) // 100.0 //
Probeset : 1623103_at
Accessions : protein= NP_001033900;, nucleotide= NM_001038811;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0032405.
VDRC has 3 RNAi stocks for FBgn0032405 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 54 of 4 3.30Up
Head110 64 of 4 6.60Up
Eye95 114 of 4 5.69Up
Thoracicoabdominal ganglion83 44 of 4 5.00Up
Salivary gland4 10 of 4 0.24Down
Crop10 00 of 4 0.60Down
Midgut18 04 of 4 1.10None
Tubule3 00 of 4 0.20Down
Hindgut21 14 of 4 1.30None
Heart386 84 of 423.01Up
Fat body6 20 of 4 0.39Down
Ovary1 00 of 4 0.10Down
Testis22 04 of 4 1.30Up
Male accessory glands6 20 of 4 0.40Down
Virgin spermatheca2 00 of 4 0.17Down
Mated spermatheca3 10 of 4 0.21Down
Adult carcass43 44 of 4 2.60Up
Larval CNS1 10 of 4 0.09Down
Larval Salivary gland0 00 of 4 0.05Down
Larval midgut1 00 of 4 0.06Down
Larval tubule23 54 of 4 1.40None
Larval hindgut5 00 of 4 0.30Down
Larval fat body31 83 of 4 1.90None
Larval trachea19 64 of 4 1.17None
Larval carcass49 64 of 4 2.97Up
S2 cells (growing)0 00 of 4 0.02Down
Whole fly16 04 of 4

Looking for FBgn0032405. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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