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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032407 through 18771 annotations produced 2 hits



Peroxisomal farnesylated protein (CG5325):

Annotation Number : CG5325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032407
Gbrowse : chr2L:12093770-12095252 (+) // 100.0 //
Probeset : 1639148_at
Accessions : protein= NP_609547; /// NP_723722;, nucleotide= NM_135703; /// NM_164991;
Pathway : 0005777 // peroxisome // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032407.
Homophila reports that CG5325 is a close match (9e-13) to human gene D1S2223E;HK33;PEX19;PXF (NP_002848), a gene associated with Zellweger syndrome, 214100 (3).
BioGrid reports that CG5325 interacts with CG5640 CG7461 CG7035 CG7081 CG8396 CG8448 .
VDRC has 2 RNAi stocks for FBgn0032407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain553 114 of 4 2.00Up
Head381 104 of 4 1.40Up
Eye304 94 of 4 1.10None
Thoracicoabdominal ganglion578 354 of 4 2.10Up
Salivary gland435 124 of 4 1.57Up
Crop1033 204 of 4 3.70Up
Midgut387 164 of 4 1.40Up
Tubule640 24 of 4 2.30Up
Hindgut670 144 of 4 2.40Up
Heart653 94 of 4 2.36Up
Fat body560 484 of 4 2.03Up
Ovary312 154 of 4 1.10None
Testis156 54 of 4 0.60Down
Male accessory glands414 94 of 4 1.50Up
Virgin spermatheca502 324 of 4 1.82Up
Mated spermatheca707 494 of 4 2.56Up
Adult carcass384 54 of 4 1.40Up
Larval CNS400 74 of 4 1.45Up
Larval Salivary gland422 124 of 4 1.53Up
Larval midgut260 174 of 4 0.94None
Larval tubule223 84 of 4 0.80Down
Larval hindgut620 344 of 4 2.24Up
Larval fat body209 224 of 4 0.80None
Larval trachea440 404 of 4 1.59Up
Larval carcass402 384 of 4 1.45Up
S2 cells (growing)403 84 of 4 1.46Up
Whole fly276 174 of 4



Peroxisomal farnesylated protein (CG5325):

Annotation Number : CG5325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032407
Gbrowse : chr2L:12093770-12094635 (+) // 100.0 //
Probeset : 1626588_a_at
Accessions : protein= NP_609547; /// NP_723722;, nucleotide= NM_135703; /// NM_164991;
Pathway : 0005777 // peroxisome // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032407.
Homophila reports that CG5325 is a close match (9e-13) to human gene D1S2223E;HK33;PEX19;PXF (NP_002848), a gene associated with Zellweger syndrome, 214100 (3).
BioGrid reports that CG5325 interacts with CG5640 CG7461 CG7035 CG7081 CG8396 CG8448 .
VDRC has 2 RNAi stocks for FBgn0032407 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain320 104 of 4 2.70Up
Head157 154 of 4 1.30None
Eye119 114 of 4 0.99None
Thoracicoabdominal ganglion241 94 of 4 2.00Up
Salivary gland182 204 of 4 1.51None
Crop465 124 of 4 3.90Up
Midgut211 134 of 4 1.80Up
Tubule76 44 of 4 0.60Down
Hindgut393 194 of 4 3.30Up
Heart297 204 of 4 2.48Up
Fat body212 354 of 4 1.77Up
Ovary112 74 of 4 0.90None
Testis64 84 of 4 0.50Down
Male accessory glands159 74 of 4 1.30Up
Virgin spermatheca45 32 of 4 0.38Down
Mated spermatheca50 54 of 4 0.42Down
Adult carcass154 314 of 4 1.30None
Larval CNS159 154 of 4 1.33Up
Larval Salivary gland204 104 of 4 1.70Up
Larval midgut107 104 of 4 0.89None
Larval tubule111 64 of 4 0.90None
Larval hindgut225 144 of 4 1.88Up
Larval fat body98 114 of 4 0.80None
Larval trachea251 304 of 4 2.10Up
Larval carcass125 144 of 4 1.04None
S2 cells (growing)333 64 of 4 2.78Up
Whole fly120 54 of 4

Looking for FBgn0032407. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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