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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032415 through 18771 annotations produced 1 hits



rhomboid-6 (rho-6):

Annotation Number : CG17212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032415
Gbrowse : chr2L:12130595-12133339 (-) // 100.0 //
Probeset : 1623620_a_at
Accessions : protein= NP_523557; /// NP_788038;, nucleotide= NM_078833; /// NM_176024;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0004252 // serine-type endopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity /
FlyMine data for FBgn0032415.
VDRC has 4 RNAi stocks for FBgn0032415 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 04 of 4 1.40None
Head24 04 of 4 4.10Up
Eye16 14 of 4 2.83Up
Thoracicoabdominal ganglion6 10 of 4 1.10None
Salivary gland11 31 of 4 2.00None
Crop3 10 of 4 0.60None
Midgut1 00 of 4 0.30Down
Tubule6 00 of 4 1.10None
Hindgut4 10 of 4 0.80None
Heart8 00 of 4 1.37None
Fat body5 10 of 4 0.90None
Ovary3 00 of 4 0.70None
Testis55 84 of 4 9.60Up
Male accessory glands6 20 of 4 1.10None
Virgin spermatheca5 00 of 4 0.99None
Mated spermatheca7 10 of 4 1.31None
Adult carcass14 20 of 4 2.40None
Larval CNS3 20 of 4 0.65None
Larval Salivary gland6 10 of 4 1.06None
Larval midgut6 10 of 4 1.14None
Larval tubule4 21 of 4 0.80None
Larval hindgut3 00 of 4 0.64None
Larval fat body8 11 of 4 1.50None
Larval trachea7 30 of 4 1.35None
Larval carcass6 00 of 4 1.04None
S2 cells (growing)3 11 of 4 0.63None
Whole fly5 00 of 4

Looking for FBgn0032415. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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