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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032419 through 18771 annotations produced 1 hits


Annotation Number : CG17217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032419
Gbrowse : chr2L:12170656-12171196 (+) // 100.0 //
Probeset : 1624287_at
Accessions : protein= NP_609555;, nucleotide= NM_135711;
FlyMine data for FBgn0032419.
BioGrid reports that CG17217 interacts with CG9986 .
VDRC has 3 RNAi stocks for FBgn0032419 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.03Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland7 20 of 4 0.14Down
Crop2 10 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.03Down
Fat body2 20 of 4 0.04Down
Ovary0 00 of 4 0.00Down
Testis646 164 of 412.10Up
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca2 00 of 4 0.05Down
Adult carcass8 20 of 4 0.20Down
Larval CNS1 00 of 4 0.03Down
Larval Salivary gland4 10 of 4 0.08Down
Larval midgut3 10 of 4 0.06Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body65 363 of 4 1.20None
Larval trachea4 41 of 4 0.08Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly53 74 of 4

Looking for FBgn0032419. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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