FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032421 through 18771 annotations produced 1 hits

crooked (crok):

Annotation Number : CG17218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032421
Gbrowse : chr2L:12172983-12174091 (+) // 100.0 //
Probeset : 1639460_a_at
Accessions : protein= NP_609557; /// NP_723734;, nucleotide= NM_135713; /// NM_164999;
FlyMine data for FBgn0032421.
BDGP gene expression has embryonic in situ data for CG17218: 22 pix of staining in 20 body parts.
VDRC has 3 RNAi stocks for FBgn0032421 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	55 ± 0	4 of 4	0.20	Down
Head	130 ± 5	4 of 4	0.50	Down
Eye	194 ± 4	4 of 4	0.77	Down
Thoracicoabdominal ganglion	73 ± 3	4 of 4	0.30	Down
Salivary gland	751 ± 56	4 of 4	2.97	Up
Crop	378 ± 9	4 of 4	1.50	Up
Midgut	50 ± 2	1 of 4	0.20	Down
Tubule	40 ± 4	4 of 4	0.20	Down
Hindgut	287 ± 6	4 of 4	1.10	None
Heart	80 ± 3	4 of 4	0.32	Down
Fat body	71 ± 6	4 of 4	0.28	Down
Ovary	552 ± 6	4 of 4	2.20	Up
Testis	147 ± 3	4 of 4	0.60	Down
Male accessory glands	331 ± 12	4 of 4	1.30	Up
Virgin spermatheca	251 ± 15	4 of 4	0.99	None
Mated spermatheca	374 ± 41	4 of 4	1.48	None
Adult carcass	104 ± 6	4 of 4	0.40	Down
Larval CNS	249 ± 6	4 of 4	0.99	None
Larval Salivary gland	1132 ± 69	4 of 4	4.48	Up
Larval midgut	90 ± 7	4 of 4	0.36	Down
Larval tubule	78 ± 3	4 of 4	0.30	Down
Larval hindgut	619 ± 8	4 of 4	2.45	Up
Larval fat body	293 ± 28	4 of 4	1.20	None
Larval trachea	848 ± 44	4 of 4	3.36	Up
Larval carcass	374 ± 19	4 of 4	1.48	Up
S2 cells (growing)	145 ± 4	4 of 4	0.57	Down
Whole fly	252 ± 16	4 of 4

Looking for FBgn0032421. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720