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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032422 through 18771 annotations produced 1 hits



(CG6579):

Annotation Number : CG6579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032422
Gbrowse : chr2L:12175447-12177886 (-) // 100.0 //
Probeset : 1626831_at
Accessions : protein= NP_609558;, nucleotide= NM_135714;
FlyMine data for FBgn0032422.
VDRC has 3 RNAi stocks for FBgn0032422 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 44 of 4 0.20Down
Head1803 614 of 4 2.60Up
Eye1055 214 of 4 1.51Up
Thoracicoabdominal ganglion366 244 of 4 0.50Down
Salivary gland6348 864 of 4 9.11Up
Crop4194 1374 of 4 6.00Up
Midgut100 44 of 4 0.10Down
Tubule35 53 of 4 0.10Down
Hindgut3317 1264 of 4 4.80Up
Heart431 234 of 4 0.62Down
Fat body532 584 of 4 0.76Down
Ovary202 94 of 4 0.30Down
Testis93 34 of 4 0.10Down
Male accessory glands3770 494 of 4 5.40Up
Virgin spermatheca1090 194 of 4 1.56Up
Mated spermatheca1611 1784 of 4 2.31Up
Adult carcass1457 574 of 4 2.10Up
Larval CNS82 184 of 4 0.12Down
Larval Salivary gland425 554 of 4 0.61Down
Larval midgut115 34 of 4 0.16Down
Larval tubule13 14 of 4 0.00Down
Larval hindgut1225 194 of 4 1.76Up
Larval fat body7 20 of 4 0.00Down
Larval trachea2237 3324 of 4 3.21Up
Larval carcass1512 1404 of 4 2.17Up
S2 cells (growing)8 10 of 4 0.01Down
Whole fly696 124 of 4

Looking for FBgn0032422. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime