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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032424 through 18771 annotations produced 2 hits



(CG17010):

Annotation Number : CG17010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032424
Gbrowse : chr2L:12356440-12357991 (+) // 100.0 //
Probeset : 1623492_a_at
Accessions : protein= NP_609560; /// NP_726718;, nucleotide= NM_135716; /// NM_166870;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016281 // eukaryotic translation initiation factor 4F c
Interpro : 0000339 // RNA cap binding // inferred from sequence or structural similarity /// 0000339 // RNA cap binding // non-trac
FlyMine data for FBgn0032424.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 10 of 4 0.02Down
Thoracicoabdominal ganglion7 30 of 4 0.10Down
Salivary gland5 10 of 4 0.04Down
Crop2 00 of 4 0.00Down
Midgut7 20 of 4 0.10Down
Tubule8 10 of 4 0.10Down
Hindgut4 10 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body5 40 of 4 0.04Down
Ovary2 00 of 4 0.00Down
Testis1350 74 of 410.50Up
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.02Down
Adult carcass7 30 of 4 0.10Down
Larval CNS3 10 of 4 0.03Down
Larval Salivary gland5 10 of 4 0.04Down
Larval midgut4 20 of 4 0.03Down
Larval tubule6 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.02Down
Larval fat body95 473 of 4 0.70None
Larval trachea5 51 of 4 0.04Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)4 10 of 4 0.03Down
Whole fly128 104 of 4



(CG17010):

Annotation Number : CG17010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032424
Gbrowse : chr2L:12356440-12357991 (+) // 100.0 //
Probeset : 1627689_at
Accessions : protein= NP_609560; /// NP_726718;, nucleotide= NM_135716; /// NM_166870;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016281 // eukaryotic translation initiation factor 4F c
Interpro : 0000339 // RNA cap binding // inferred from sequence or structural similarity /// 0000339 // RNA cap binding // non-trac
FlyMine data for FBgn0032424.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion4 00 of 4 0.10Down
Salivary gland4 21 of 4 0.06Down
Crop3 10 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule3 00 of 4 0.10Down
Hindgut2 10 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body2 10 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis882 254 of 412.00Up
Male accessory glands4 20 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass9 22 of 4 0.10Down
Larval CNS1 00 of 4 0.03Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut0 00 of 4 0.01Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body67 374 of 4 0.90None
Larval trachea1 21 of 4 0.03Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)2 10 of 4 0.03Down
Whole fly73 54 of 4

Looking for FBgn0032424. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime