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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032428 through 18771 annotations produced 1 hits



(CG6405):

Annotation Number : CG6405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032428
Gbrowse : chr2L:12424903-12426440 (+) // 100.0 //
Probeset : 1628525_at
Accessions : protein= NP_609564;, nucleotide= NM_135720;
FlyMine data for FBgn0032428.
BDGP gene expression has embryonic in situ data for CG6405: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032428 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 0.80None
Head10 03 of 4 0.60Down
Eye10 21 of 4 0.55Down
Thoracicoabdominal ganglion12 12 of 4 0.70None
Salivary gland12 50 of 4 0.63None
Crop16 13 of 4 0.80None
Midgut9 21 of 4 0.50Down
Tubule7 10 of 4 0.40Down
Hindgut9 00 of 4 0.50Down
Heart7 10 of 4 0.36Down
Fat body12 22 of 4 0.65None
Ovary5 10 of 4 0.30Down
Testis93 64 of 4 4.80Up
Male accessory glands33 13 of 4 1.70Up
Virgin spermatheca4 10 of 4 0.23Down
Mated spermatheca7 20 of 4 0.41Down
Adult carcass12 10 of 4 0.70None
Larval CNS15 24 of 4 0.78None
Larval Salivary gland19 33 of 4 0.99None
Larval midgut18 11 of 4 0.95None
Larval tubule9 31 of 4 0.50Down
Larval hindgut11 04 of 4 0.57Down
Larval fat body39 73 of 4 2.00None
Larval trachea6 00 of 4 0.34Down
Larval carcass17 03 of 4 0.88None
S2 cells (growing)14 13 of 4 0.76None
Whole fly19 24 of 4

Looking for FBgn0032428. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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