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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032429 through 18771 annotations produced 1 hits



(CG5446):

Annotation Number : CG5446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032429
Gbrowse : chr2L:12426941-12427663 (-) // 100.0 //
Probeset : 1641334_at
Accessions : protein= NP_609565;, nucleotide= NM_135721;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032429.
BDGP gene expression has embryonic in situ data for CG5446: 13 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0032429 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain391 ± 44 of 4 1.10Up
Head438 ± 124 of 4 1.20Up
Eye654 ± 134 of 4 1.83Up
Thoracicoabdominal ganglion368 ± 94 of 4 1.00None
Salivary gland446 ± 44 of 4 1.25Up
Crop544 ± 54 of 4 1.50Up
Midgut465 ± 54 of 4 1.30Up
Tubule237 ± 34 of 4 0.70Down
Hindgut360 ± 54 of 4 1.00None
Heart482 ± 144 of 4 1.35Up
Fat body455 ± 214 of 4 1.27Up
Ovary538 ± 34 of 4 1.50Up
Testis507 ± 94 of 4 1.40Up
Male accessory glands771 ± 64 of 4 2.20Up
Virgin spermatheca400 ± 84 of 4 1.12Up
Mated spermatheca416 ± 84 of 4 1.16Up
Adult carcass364 ± 174 of 4 1.00None
Larval CNS693 ± 284 of 4 1.94Up
Larval Salivary gland523 ± 64 of 4 1.46Up
Larval midgut436 ± 124 of 4 1.22Up
Larval tubule880 ± 204 of 4 2.50Up
Larval hindgut534 ± 244 of 4 1.49Up
Larval fat body1772 ± 1734 of 4 5.00Up
Larval trachea624 ± 254 of 4 1.75Up
Larval carcass374 ± 194 of 4 1.05None
S2 cells (growing)743 ± 64 of 4 2.08Up
Whole fly357 ± 94 of 4

Looking for FBgn0032429. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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