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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032435 through 18771 annotations produced 1 hits



Organic anion transporting polypeptide 33Eb (Oatp33Eb):

Annotation Number : CG6417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032435
Gbrowse : chr2L:12448485-12452053 (+) // 100.0 //
Probeset : 1630804_at
Accessions : protein= NP_609570;, nucleotide= NM_135726;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008514 // organic anion transmembrane transp
FlyMine data for FBgn0032435.
BDGP gene expression has embryonic in situ data for CG6417: 35 pix of staining in 15 body parts.
VDRC has 3 RNAi stocks for FBgn0032435 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye2 10 of 4 0.04Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland8 40 of 4 0.14Down
Crop8 20 of 4 0.10Down
Midgut383 184 of 4 6.50Up
Tubule669 614 of 411.30Up
Hindgut145 74 of 4 2.50Up
Heart2 10 of 4 0.05Down
Fat body2 00 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis5 20 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca5 20 of 4 0.10Down
Mated spermatheca2 00 of 4 0.05Down
Adult carcass5 30 of 4 0.10Down
Larval CNS3 20 of 4 0.05Down
Larval Salivary gland4 00 of 4 0.08Down
Larval midgut421 424 of 4 7.14Up
Larval tubule235 134 of 4 4.00Up
Larval hindgut237 164 of 4 4.02Up
Larval fat body2 00 of 4 0.00Down
Larval trachea3 30 of 4 0.06Down
Larval carcass3 00 of 4 0.06Down
S2 cells (growing)2 00 of 4 0.04Down
Whole fly59 54 of 4

Looking for FBgn0032435. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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