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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032436 through 18771 annotations produced 1 hits



(CG5418):

Annotation Number : CG5418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032436
Gbrowse : chr2L:12452060-12453230 (-) // 100.0 //
Probeset : 1641443_at
Accessions : protein= NP_609571;, nucleotide= NM_135727;
Interpro : 0042802 // identical protein binding // inferred from physical interaction
FlyMine data for FBgn0032436.
BioGrid reports that CG5418 interacts with CG5418 .
VDRC has 2 RNAi stocks for FBgn0032436 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 1.00None
Head16 ± 13 of 4 2.50Up
Eye7 ± 02 of 4 1.14None
Thoracicoabdominal ganglion5 ± 21 of 4 0.80None
Salivary gland6 ± 10 of 4 1.01None
Crop4 ± 20 of 4 0.70None
Midgut4 ± 00 of 4 0.70None
Tubule6 ± 00 of 4 0.90None
Hindgut7 ± 10 of 4 1.10None
Heart73 ± 34 of 411.19Up
Fat body6 ± 30 of 4 0.91None
Ovary3 ± 00 of 4 0.50Down
Testis7 ± 10 of 4 1.10None
Male accessory glands11 ± 20 of 4 1.80None
Virgin spermatheca3 ± 00 of 4 0.56Down
Mated spermatheca4 ± 00 of 4 0.69None
Adult carcass18 ± 21 of 4 2.80Up
Larval CNS2 ± 00 of 4 0.38Down
Larval Salivary gland4 ± 10 of 4 0.62None
Larval midgut4 ± 10 of 4 0.63None
Larval tubule8 ± 00 of 4 1.30None
Larval hindgut5 ± 00 of 4 0.86None
Larval fat body8 ± 21 of 4 1.30None
Larval trachea5 ± 21 of 4 0.76None
Larval carcass5 ± 10 of 4 0.80None
S2 cells (growing)13 ± 12 of 4 2.05Up
Whole fly6 ± 00 of 4

Looking for FBgn0032436. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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