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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032446 through 18771 annotations produced 1 hits



(CG5780):

Annotation Number : CG5780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032446
Gbrowse : chr2L:12693871-12694984 (-) // 100.0 //
Probeset : 1637810_at
Accessions : protein= NP_609581;, nucleotide= NM_135737;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032446.
BioGrid reports that CG5780 interacts with CG9083 .
VDRC has 1 RNAi stocks for FBgn0032446 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 0.30Down
Head27 ± 24 of 4 0.50Down
Eye19 ± 13 of 4 0.33Down
Thoracicoabdominal ganglion28 ± 14 of 4 0.50Down
Salivary gland17 ± 30 of 4 0.29Down
Crop22 ± 24 of 4 0.40Down
Midgut24 ± 24 of 4 0.40Down
Tubule20 ± 13 of 4 0.30Down
Hindgut14 ± 14 of 4 0.30Down
Heart18 ± 24 of 4 0.33Down
Fat body17 ± 54 of 4 0.29Down
Ovary157 ± 44 of 4 2.70Up
Testis58 ± 04 of 4 1.00None
Male accessory glands13 ± 31 of 4 0.20Down
Virgin spermatheca14 ± 33 of 4 0.25Down
Mated spermatheca17 ± 13 of 4 0.30Down
Adult carcass26 ± 34 of 4 0.50Down
Larval CNS28 ± 34 of 4 0.50Down
Larval Salivary gland29 ± 24 of 4 0.52Down
Larval midgut20 ± 24 of 4 0.36Down
Larval tubule24 ± 34 of 4 0.40Down
Larval hindgut12 ± 24 of 4 0.21Down
Larval fat body21 ± 33 of 4 0.40Down
Larval trachea19 ± 54 of 4 0.34Down
Larval carcass20 ± 24 of 4 0.35Down
S2 cells (growing)15 ± 14 of 4 0.27Down
Whole fly57 ± 24 of 4

Looking for FBgn0032446. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime