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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032447 through 18771 annotations produced 1 hits



PICK1 (PICK1):

Annotation Number : CG6167
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032447
Gbrowse : chr2L:12695037-12698917 (+) // 100.0 //
Probeset : 1623746_a_at
Accessions : protein= NP_609582; /// NP_723766;, nucleotide= NM_135738; /// NM_165018;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0032447.
TRiP has 1 RNAi stocks for FBgn0032447 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032447 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 54 of 410.90Up
Head71 14 of 4 3.30Up
Eye98 54 of 4 4.55Up
Thoracicoabdominal ganglion247 34 of 411.50Up
Salivary gland3 00 of 4 0.15Down
Crop27 43 of 4 1.30None
Midgut10 10 of 4 0.50Down
Tubule3 00 of 4 0.20Down
Hindgut4 10 of 4 0.20Down
Heart3 10 of 4 0.16Down
Fat body2 20 of 4 0.11Down
Ovary5 01 of 4 0.30Down
Testis195 14 of 4 9.10Up
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca5 10 of 4 0.23Down
Mated spermatheca7 20 of 4 0.32Down
Adult carcass12 31 of 4 0.60None
Larval CNS95 14 of 4 4.42Up
Larval Salivary gland4 30 of 4 0.21Down
Larval midgut8 10 of 4 0.37Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut1 10 of 4 0.08Down
Larval fat body44 153 of 4 2.10None
Larval trachea7 32 of 4 0.36Down
Larval carcass5 10 of 4 0.24Down
S2 cells (growing)9 00 of 4 0.43Down
Whole fly21 14 of 4

Looking for FBgn0032447. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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