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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032449 through 18771 annotations produced 1 hits



(CG17036):

Annotation Number : CG17036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032449
Gbrowse : chr2L:12699060-12700746 (-) // 100.0 //
Probeset : 1628221_at
Accessions : protein= NP_609584;, nucleotide= NM_135740;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0005542 // folic acid binding // inferred from electronic annotation /// 0008518 // reduced folate carrier activity // i
FlyMine data for FBgn0032449.
Homophila reports that CG17036 is a close match (2e-57) to human gene SLC19A3 (NP_079519), a gene associated with Basal ganglia disease, biotin-responsive, 607483 (3).
VDRC has 2 RNAi stocks for FBgn0032449 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 1.00None
Head10 ± 04 of 4 0.60Down
Eye4 ± 10 of 4 0.27Down
Thoracicoabdominal ganglion11 ± 03 of 4 0.60Down
Salivary gland15 ± 31 of 4 0.82None
Crop11 ± 00 of 4 0.60Down
Midgut84 ± 64 of 4 4.50Up
Tubule180 ± 294 of 4 9.70Up
Hindgut9 ± 11 of 4 0.50Down
Heart15 ± 04 of 4 0.83None
Fat body11 ± 34 of 4 0.64Down
Ovary33 ± 14 of 4 1.80Up
Testis45 ± 44 of 4 2.40Up
Male accessory glands8 ± 30 of 4 0.50None
Virgin spermatheca9 ± 14 of 4 0.51Down
Mated spermatheca11 ± 14 of 4 0.63Down
Adult carcass14 ± 21 of 4 0.80None
Larval CNS32 ± 54 of 4 1.75Up
Larval Salivary gland12 ± 14 of 4 0.69Down
Larval midgut50 ± 24 of 4 2.72Up
Larval tubule19 ± 14 of 4 1.00None
Larval hindgut19 ± 14 of 4 1.07None
Larval fat body30 ± 84 of 4 1.60None
Larval trachea19 ± 44 of 4 1.05None
Larval carcass31 ± 34 of 4 1.66Up
S2 cells (growing)1 ± 00 of 4 0.09Down
Whole fly18 ± 14 of 4

Looking for FBgn0032449. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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