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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032451 through 18771 annotations produced 1 hits



CG12292 (spict):

Annotation Number : CG12292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032451
Gbrowse : chr2L:12704722-12706683 (+) // 100.0 //
Probeset : 1627925_at
Accessions : protein= NP_609586;, nucleotide= NM_135742;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032451.
BDGP gene expression has embryonic in situ data for CG12292: 4 pix of staining in 1 body parts.
Homophila reports that CG12292 is a close match (4e-50) to human gene NIPA1;SPG6 (NP_653200), a gene associated with Spastic paraplegia-6, 600363 (3).
TRiP has 2 RNAi stocks for FBgn0032451 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032451 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain158 ± 84 of 4 0.80None
Head246 ± 94 of 4 1.30Up
Eye711 ± 264 of 4 3.75Up
Thoracicoabdominal ganglion125 ± 34 of 4 0.70Down
Salivary gland304 ± 134 of 4 1.61Up
Crop265 ± 44 of 4 1.40Up
Midgut398 ± 184 of 4 2.10Up
Tubule1129 ± 1664 of 4 6.00Up
Hindgut341 ± 64 of 4 1.80Up
Heart357 ± 144 of 4 1.88Up
Fat body265 ± 324 of 4 1.40Up
Ovary254 ± 84 of 4 1.30Up
Testis86 ± 44 of 4 0.50Down
Male accessory glands132 ± 64 of 4 0.70Down
Virgin spermatheca277 ± 184 of 4 1.46Up
Mated spermatheca265 ± 104 of 4 1.40Up
Adult carcass269 ± 124 of 4 1.40Up
Larval CNS110 ± 44 of 4 0.58Down
Larval Salivary gland206 ± 74 of 4 1.09None
Larval midgut510 ± 84 of 4 2.69Up
Larval tubule543 ± 164 of 4 2.90Up
Larval hindgut358 ± 174 of 4 1.89Up
Larval fat body327 ± 324 of 4 1.70Up
Larval trachea297 ± 214 of 4 1.57Up
Larval carcass179 ± 124 of 4 0.95None
S2 cells (growing)175 ± 44 of 4 0.92None
Whole fly189 ± 104 of 4

Looking for FBgn0032451. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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