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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032453 through 18771 annotations produced 1 hits



(CG6180):

Annotation Number : CG6180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032453
Gbrowse : chr2L:12707660-12708684 (+) // 100.0 //
Probeset : 1626278_at
Accessions : protein= NP_609588;, nucleotide= NM_135744;
Interpro : 0008429 // phosphatidylethanolamine binding // inferred from sequence or structural similarity
FlyMine data for FBgn0032453.
VDRC has 3 RNAi stocks for FBgn0032453 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain576 ± 174 of 4 0.60Down
Head916 ± 604 of 4 1.00None
Eye1041 ± 434 of 4 1.15Up
Thoracicoabdominal ganglion613 ± 264 of 4 0.70Down
Salivary gland1119 ± 234 of 4 1.24Up
Crop663 ± 214 of 4 0.70Down
Midgut1046 ± 204 of 4 1.20Up
Tubule980 ± 264 of 4 1.10Up
Hindgut994 ± 274 of 4 1.10Up
Heart848 ± 124 of 4 0.94Down
Fat body965 ± 724 of 4 1.07None
Ovary1150 ± 44 of 4 1.30Up
Testis578 ± 84 of 4 0.60Down
Male accessory glands1142 ± 444 of 4 1.30Up
Virgin spermatheca1878 ± 254 of 4 2.08Up
Mated spermatheca1476 ± 274 of 4 1.63Up
Adult carcass693 ± 594 of 4 0.80Down
Larval CNS878 ± 474 of 4 0.97None
Larval Salivary gland676 ± 464 of 4 0.75Down
Larval midgut1036 ± 164 of 4 1.15Up
Larval tubule1327 ± 864 of 4 1.50Up
Larval hindgut956 ± 254 of 4 1.06None
Larval fat body1306 ± 1004 of 4 1.40Up
Larval trachea1131 ± 734 of 4 1.25Up
Larval carcass848 ± 424 of 4 0.94None
S2 cells (growing)588 ± 204 of 4 0.65Down
Whole fly903 ± 124 of 4

Looking for FBgn0032453. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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