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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032454 through 18771 annotations produced 1 hits



(CG5787):

Annotation Number : CG5787
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032454
Gbrowse : chr2L:12708784-12712468 (-) // 100.0 //
Probeset : 1629001_at
Accessions : protein= NP_609589;, nucleotide= NM_135745;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0032454.
VDRC has 3 RNAi stocks for FBgn0032454 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain162 ± 14 of 4 0.80None
Head78 ± 34 of 4 0.40Down
Eye81 ± 44 of 4 0.42Down
Thoracicoabdominal ganglion163 ± 74 of 4 0.80None
Salivary gland171 ± 94 of 4 0.88None
Crop131 ± 54 of 4 0.70Down
Midgut86 ± 34 of 4 0.40Down
Tubule117 ± 34 of 4 0.60Down
Hindgut110 ± 134 of 4 0.60Down
Heart64 ± 24 of 4 0.33Down
Fat body59 ± 44 of 4 0.30Down
Ovary405 ± 64 of 4 2.10Up
Testis281 ± 84 of 4 1.40Up
Male accessory glands229 ± 94 of 4 1.20None
Virgin spermatheca128 ± 64 of 4 0.66Down
Mated spermatheca146 ± 54 of 4 0.75Down
Adult carcass59 ± 44 of 4 0.30Down
Larval CNS453 ± 184 of 4 2.32Up
Larval Salivary gland359 ± 114 of 4 1.84Up
Larval midgut91 ± 34 of 4 0.47Down
Larval tubule146 ± 44 of 4 0.80Down
Larval hindgut150 ± 44 of 4 0.77Down
Larval fat body123 ± 134 of 4 0.60Down
Larval trachea239 ± 244 of 4 1.23Up
Larval carcass196 ± 124 of 4 1.01None
S2 cells (growing)348 ± 144 of 4 1.79Up
Whole fly195 ± 124 of 4

Looking for FBgn0032454. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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