Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032457 through 18771 annotations produced 1 hits


chr2L:12760455-12761840 (-) // 100.0 // ():

Annotation Number : CG15483
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633310_at
Accessions : protein= , nucleotide= NP_609592;
FlyMine data for full length.
Homophila reports that CG15483 is a close match (9e-12) to human gene KIAA0609;LARGE;MDC1D (NP_598397), a gene associated with Muscular dystrophy, congenital, type 1D, 608840 (3);Walker-Warburg syndrome, 236670 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head1 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.23Down
Crop0 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.09Down
Fat body2 ± 20 of 4 0.07Down
Ovary0 ± 00 of 4 0.00Down
Testis352 ± 164 of 412.10Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.06Down
Mated spermatheca5 ± 20 of 4 0.17Down
Adult carcass7 ± 30 of 4 0.20Down
Larval CNS3 ± 10 of 4 0.11Down
Larval Salivary gland6 ± 30 of 4 0.23Down
Larval midgut5 ± 10 of 4 0.19Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.10Down
Larval fat body30 ± 112 of 4 1.00None
Larval trachea0 ± 00 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly29 ± 34 of 4

Looking for FBgn0032457. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime