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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032470 through 18771 annotations produced 1 hits



(CG5142):

Annotation Number : CG5142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032470
Gbrowse : chr2L:13106884-13109409 (+) // 100.0 //
Probeset : 1632369_at
Accessions : protein= NP_001097155;, nucleotide= NM_001103685;
Pathway : 0005879 // axonemal microtubule // inferred from sequence or structural similarity /// 0005929 // cilium // inferred fro
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred fr
FlyMine data for FBgn0032470.
VDRC has 3 RNAi stocks for FBgn0032470 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 1.90Up
Head18 10 of 4 4.70Up
Eye13 30 of 4 3.54None
Thoracicoabdominal ganglion6 30 of 4 1.60None
Salivary gland9 30 of 4 2.43None
Crop14 10 of 4 3.70Up
Midgut10 00 of 4 2.60Up
Tubule83 173 of 421.50Up
Hindgut46 11 of 411.90Up
Heart12 20 of 4 3.25Up
Fat body35 50 of 4 9.22Up
Ovary2 00 of 4 0.50None
Testis2 00 of 4 0.70None
Male accessory glands6 10 of 4 1.60None
Virgin spermatheca21 10 of 4 5.55Up
Mated spermatheca45 61 of 411.78Up
Adult carcass23 40 of 4 6.10Up
Larval CNS2 20 of 4 0.65None
Larval Salivary gland5 10 of 4 1.48None
Larval midgut11 20 of 4 3.01None
Larval tubule5 10 of 4 1.40None
Larval hindgut1 00 of 4 0.46None
Larval fat body1 00 of 4 0.40Down
Larval trachea21 102 of 4 5.59Up
Larval carcass2 10 of 4 0.75None
S2 cells (growing)14 10 of 4 3.63Up
Whole fly3 00 of 4

Looking for FBgn0032470. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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