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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032471 through 18771 annotations produced 1 hits


(CG5122):

Annotation Number : CG5122
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032471
Gbrowse : chr2L:13130612-13134805 (+) // 100.0 //
Probeset : 1634693_at
Accessions : protein= NP_609601;, nucleotide= NM_135757;
Interpro : 0004092 // carnitine O-acetyltransferase activity // inferred from sequence or structural similarity /// 0004092 // carn
FlyMine data for FBgn0032471.
Homophila reports that CG5122 is a close match (2e-41) to human gene CPT2 (NP_000089), a gene associated with CPT deficiency, hepatic, type II, 600649 (3);CPT II deficiency, lethal neonatal, 608836 (3);Myopathy due to CPT II deficiency, 255110 (3).
VDRC has 2 RNAi stocks for FBgn0032471 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.06Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule6 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body4 ± 20 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis826 ± 164 of 413.60Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca5 ± 20 of 4 0.10Down
Mated spermatheca13 ± 50 of 4 0.23Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS5 ± 20 of 4 0.08Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.04Down
Larval fat body41 ± 292 of 4 0.70None
Larval trachea5 ± 50 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly60 ± 24 of 4

Looking for FBgn0032471. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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